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Neuroscience Projects at the ANU
| Neuroscience Projects at the ANU Information
for Students |
Neuroscientists from all parts of the Australian National
University have provided descriptions of research areas
and projects for Honours students. A range of exciting projects
are available from the following areas:
The John Curtin School of Medical Research
School of Biochemistry and Molecular Biology
Research School of Biological Sciences
Please take your time to read through this document. Select
two or three projects which really interest you and then
contact Dr Anna Cowan by phone, (02) 6125 1606/ 58506, or
E-mail: anna.cowan@anu.edu.au
, about further meetings with the staff supervising
those projects. If you have your own ideas about a project
please consult Dr Cowan (every effort will be made to find
a staff member willing to supervise the proposed project).
Further information on Neuroscience in all parts of the
ANU can be found through the ANU
library . Numerous web links are also scattered through
the project outlines given below.
Prospective students should note that the Honours year
usually begins in early February and finishes in late November
(10 months). It is possible to start in July and finish
the following May and some projects listed below demand
this. A Graduate Diploma student is permitted up to 2 years
full-time study but in Neuroscience we urge such students
to join in with the Honours program and complete studies
in 10-12 months, if the project permits.
Both Honours and Graduate Diploma students may study part-time
and enrolment in either course does not need to be contiguous
with completion of a Bachelors degree. |
Projects
in 2007-8 |
| Division
of Neuroscience, JCSMR |
Dr John Bekkers, Cerebral
Cortex Lab , JCSMR |
| How the Brain Decodes Odors The mammalian brain
recognises and remembers odours in a specialised cortical
region, the olfactory cortex, located just behind the nose
in the ventral forebrain. The olfactory cortex has a remarkably
simple anatomical structure, yet little is known about how
it does its job. My laboratory is using patch clamp techniques
to study the cellular physiology of the primary olfactory
cortex of mice, with the eventual aim of understanding how
the brain represents olfactory information. Projects are
available that study synaptic transmission and excitability
in acute slices of mouse olfactory cortex.
|
| Dr Clarke Raymond, Learning
and Memory Lab , JCSMR |
The role of different neuronal calcium sources
in synaptic plasticity
The role of different neuronal calcium sources in synaptic
plasticity
The term synaptic plasticity refers to the ability of neuronal
connections to change their properties in response to particular
types of input. This plasticity is important because it
allows the brain to adapt to, and learn from, the external
environment. One example of synaptic plasticity that is
of particular interest is long-term potentiation (LTP) ,
which is widely believed to underlie learning and memory
in the brain. LTP is a persistent enhancement of the strength,
or efficacy, of a synapse in response to specific patterns
of neuronal activity. This change is measured in the laboratory
as a change in the size of the excitatory postsynaptic potential
(EPSP) evoked by stimulation of presynaptic axons.
Much has been learned about LTP over the past 30 years,
including the crucial role of postsynaptic calcium in triggering
the change. It is also known that different biochemical
pathways are important for maintaining LTP over different
periods of time. We have recently found that different calcium
sources in different parts of the neuron are selectively
involved in triggering LTP of different durations. We are
currently investigating various aspects of the physiological
signalling underlying these different forms of LTP in the
rat hippocampus. We will be using a combination of extracellular
field recordings, whole-cell patch-clamp, and 2-photon laser
scanning microscopy.
Reference:
Raymond CR and Redman SJ (2006) Spatial segregation of
neuronal calcium signals encodes different forms of LTP
in rat hippocampus. Journal of Physiology 570(1): 97-111
|
| A/Prof. Christian Stricker and Dr Anna Cowan, Neuronal
Network Lab , JCSMR |
Our group is interested in the basic mechanisms of synaptic
transmission in the mammalian central nervous system, how
it is modulated and the efficiency with which information
is transferred from one cell to another. This information
is important for understanding defining principles in the
functional connectivity of neuronal networks, how network
behaviour is modified by preceeding or concurrent activity,
and how networks adapt to environmental influences. Our
current research is focussed on synaptic transmission between
neurones in the somatosensory cortex in acute rat brain
slices.
We offer projects in the following areas:
- Role of intracellular calcium stores in evoked and spontaneous
transmitter release.
- Electrophysiology and/or modelling of synaptic dynamics.
- Computer-assisted reconstruction of connected cells
and modelling of synaptic transmission.
- Mathematical modelling of non-random processes in synaptic
transmission.
|
| Dr Greg Stuart, Neuronal
Signalling Laboratory, JCSMR |
Dendrites: The brain within the brain.
The brain is made up of billions of neurons connected to each
other via synapses to form specific neuronal networks. The
main objective of my group is to understand how individual
neurons within these networks integrate the synaptic inputs
they receive to generate an output signal, the action potential.
As most of this synaptic input is made on to a neuron's dendrites,
understanding information processing in dendrites is a main
focus in the lab. We are currently studying this issue in
both in vitro (brain slice) and in vivo (rat cortex) preparations
using both electrophysiological (patch clamp) and imaging
(calcium and voltage) techniques.
Reference: Hausser M, Spruston N, Stuart
GJ. Diversity and dynamics of dendritic signaling. Science.
2000 290:739-44.
|
| Dr Maarten Kole, Neuronal
Signalling Laboratory, JCSMR |
Mechanisms of Axonal Signalling.
Individual neurons integrate thousands of incoming signals
at synapses located at highly branched dendrites to generate
an action potential, providing the main rapid output signal
into the axon. Neurons are connected by axons. To encode information
between neurons, action potential signals are generated in
rate and temporal patterns and transmitted in the axon. Therefore,
an understanding of action potential initiation and propagation
within individual neurons is a prerequisite to gain insight
into how neuronal networks encode and decode information.
In our lab we use patch-clamp and/or imaging techniques in
brain slices (in vitro) to study the subcellular computations
within single or connected neurons. Research projects are
available to build further on the identification of mechanisms
involved in axonal signalling, such as the role of voltage-gated
channel expression in cortical myelinated axons. Topics could
also cover the role of axon signalling during pathophysiology,
such as during epileptic seizures. The candidate will receive
all necessary training in current techniques in cellular physiology.
Reference: Kole MHP, Letzkus JJ and Stuart GJ (2007). Axon
initial segment Kv1 channels control axonal action potential
waveform and synaptic efficacy. Neuron. 55 (4). In press
|
| Prof.
Trevor Lamb , Visual Neuroscience Lab,
JCSMR |
Photoreceptor and bipolar cell responses in vivo
measured from the human electroretinogram (ERG)
The electroretinogram (ERG), measured from the living eye
in response to illumination, comprises the summed activity
of several types of retinal cell.The photoreceptors respond
first and then, after a delay, signals arise from bipolar
cells, and then from other more proximal retinal neurons.
In the Visual Neuroscience Laboratory we study responses
from retinal neurons with the ERG technique, using full-field
("e;ganzfeld"e;) stimuli to stimulate the entire
retina uniformly. Projects are offered in the following
areas:
- Responses of cone photoreceptors to the cessation of
a light stimulus.
- Responses of rod bipolar cells to very dim illumination.
|
| Professor Caryl Hill, Blood
Vessel Lab , JCSMR |
The Blood Vessel Lab is interested in the formation and
function of synapses between autonomic nerves and their
target tissues. One of the more important of these targets
is the cardiovascular system. Efficient coupling between
smooth muscle cells of the walls of blood vessels seems
crucial to the production of coordinated contractions following
either receptor activation or in the case of spontaneous
rhythmic contractions. Current studies are focused on mechanisms
of arteriolar contractility with special emphasis on the
role and regulation of cell to cell coupling through structures
called gap junctions which in turn contain molecules called
connexins. Evidence suggests that upregulation of connexin
molecules plays an important role in cardiovascular disease,
such as hypertension. Our current research aims to determine
the precise role of connexins in nerve-mediated and spontaneous
contractions, using intracellular recording techniques,
single cell dye injection and calcium imaging. Dye coupling
and calcium movements will also be measured after activation
of neurotransmitter receptors and their linked intracellular
pathways. Involvement of specific pathways can be tested
using drugs which can interfere with or mimic the molecules
mediating these pathways. It is hoped to extend these studies
to blood vessels of mice in which connexin expression has
been upregulated.
|
| Dr Zan-Min Song, Brain
Development Lab , JCSMR & ANU Medical School |
Hirschsprung's disease (HSCR) is a congenital malformation
characterized by the absence of enteric ganglia (aganglionosis)
and is associated with a variety of neurological disorders.
HSCR in human, rat and mouse is polygenic, and the endothelin
receptor B (ETRB) gene mutation is involved. One of our
main scientific goals is to understand the cellular, molecular
and functional abnormalities in the brains of HSCR patients,
using a rat model of HSCR caused by an ETRB mutation (spotting
lethal rat, sl rat). Our initial studies showed that substantially
fewer proliferating cells but more apoptotic cells in many
brain regions in sl rat, compared with normal littermates.
We also expect to reveal significant changes in the biochemistry
of sl rat brains, including altered levels of cytoskeletal
proteins and production of neurotrophic factors and endothelins.
We are conducting a battery of molecular biological and
morphological tests in fetal and postnatal sl rats. Because
the endothelin system interacts with the GDNF signalling
system commonly involved in HSCR, our findings in the sl
rat will contribute to the understanding of HSCR etiology
in human. New understanding of the changes in the brains
of HSCR patients will allow investigation of functional
defects in the CNS.
|
| Professor Bruce Walmsley, Synapse
and Hearing Lab , JCSMR |
Our group is interested in the basic mechanisms of synaptic
transmission in the mammalian central nervous system. Our
current research is focussed on synaptic transmission between
neurones in the auditory system, as this system offers unique
technical advantages for the study of fundamental synaptic
mechanisms. We offer projects in two main areas of research:
neurophysiology and neuroanatomy.
Electrophysiological measurements of synaptic currents
The mechanisms of synaptic transmission will be studied
in thin slices of living brain tissue. Neurones will be
visualized in thin brain slices using special infra-red
video microscopy, and recordings of synaptic currents made
using patch-electrodes. Calcium is the major trigger for
neurotransmitter release and experiments will be carried
out to determine the role and modulation of different calcium
channels in transmitter release at auditory synapses.
Neuroanatomical studies of synaptic structure
The clustering of neurotransmitter receptors in the postsynaptic
membrane is an important determinant of synaptic strength.
The location and clustering of these receptors will be studied
using intracellular fluorescence labelling of individual
neurones in conjunction with immunohistochemical localization
of specific receptors. The clustering of receptors will
be mapped over the surface of the neurones using confocal
microscopy.
|
| Dr Louise Tierney. Membrane
Physiology and Biophysic , JCSMR |
Molecular mechanisms of ion channel function
The ligand-gated ion channels combine the functionalities
of a receptor and an ion channel in a single protein, and
mediate fast synaptic signalling in the central nervous
system. I endeavour to understand the function of these
multi-subunit protein complexes from the perspective of
a protein chemist, in both native and model systems. The
functional studies are focused on GABA A receptors with
an emphasis on drug modulation (benzodiazepines, anaesthetics,
barbiturates) and the relationship between drug action and
the organised expression of GABA A receptors. Possible projects
are outlined briefly below.
Functional consequences of clustering GABA A receptor
and the physical interactions underlying clustering.
The GABAA receptor is the major inhibitory ligand-gated
ion channel in the central nervous system. Receptors are
found clustered at synapses and may be either dispersed
or clustered at extrasynaptic locations. These three pools
of GABA A receptors have important functional differences
and their relative expression levels are critical for not
only neuronal inhibition, but also basic functions such
as learning and memory, motor and cognitive functions as
well as clinical areas such as epilepsy, sleep disorders,
anxiety and drugs of dependence. We have shown that recombinant
receptors clustered by the GABA A receptor associated protein
(GABARAP) behave differently when clustered. The conductance
of the ion channel increases and drugs are more efficacious.
a) Identification of GABA A subunit interaction partners.
: Clustering of GABA A receptors involves a physical interaction
between receptors. To identify the specific subunits involved
in receptor interactions and their interacting sequences,
a recombinant expression system will be used to express
and purify fragments of GABA A subunits. Combinations of
fragments will then be tested for specific interactions
using a modified Western blotting technique.
b) Single channel properties of extrasynaptic GABA A channels.
Using the patch clamp technique the electrophysiological
consequences of clustering and declustering will be examined,
with particular attention to how drug effects are altered.
Selected Publications:
- Luu T, Gage PW, Tierney ML. 2006. GABA increases both
the conductance and mean open time of recombinant GABA
A channels co-expressed with GABARAP. J Biol Chem accepted
.
- Everitt AB, Tien T, Cromer B, Tierney ML, Birnir B,
Olsen RW, Gage PW. 2004. Conductance of recombinant GABA
A receptors is increased in cells co-expressing GABARAP.
J Biol Chem 279: 21701-06.
- Eghbali M, Curmi JP, Birnir B, Gage PW. 1997. Hippocampal
GABA A channel conductance increased by diazepam. Nature
388: 71-75.
|
| Biochemistry
and Molecular Biology, The Faculties |
Dr Rosemary
Martin , Division of Biochemistry & Molecular Biology,
The Faculties |
Studies currently underway in my laboratory include the
development of a suite of serum protein biomarkers that are
diagnostic and prognostic for neonatal hypoxic-ischaemic injury.
Early results show good promise and we are now keen to apply
the same technology to another related problem: the development
of a suite of serum protein biomarkers in stroke. Stroke is
one of the leading causes of death and disablement in adult
Australians and a test for its very early diagnosis coupled
with prognostic capabilities would be a significant development.
These studies will involve induction of stroke in adult rats
under anaesthesia. Serum will be obtained from blood collected
at various times after stroke and subjected to 2-dimensional
difference in gel electrophoresis. Final steps will include
protein digestion and mass spectrometry for identification
of serum proteins whose expression is changed in stroke.
|
| Dr
Stefan Broer , Division of Biochemistry
& Molecular Biology, The Faculties |
Recycling of glutamate and GABA in the brain
Glutamate is the most abundant excitatory neurotransmitter
in the brain. It is involved in fast neurotransmission underlying
thinking, memory, movement, processing of sensual information
etc. After its release into the synaptic cleft its action
is terminated by uptake of glutamate into neighbouring astrocytes.
Inside astrocytes, glutamate is converted into glutamine,
which is released from astrocytes and subsequently used
by neurons to synthesize glutamate. My group is interested
in the function and regulation of transporters mediating
the transfer of glutamine between astrocytes and neurons.
Alterations in the activity of these transporters might
influence neuronal activity. A similar recycling process
is also observed in the case of the major inhibitory neurotransmitter
GABA. We use primary cultures of brain astrocytes and neurons
to analyze the mechanism of metabolite release and the regulation
of these processes. To characterize the transporters on
a molecular level we express them in Xenopus laevis oocytes
and analyze their function by biochemical techniques and
flux studies. Available honours project:
Identification and characterisation of novel members
of the neurotransmitter transporter family.
The aim of the study would be to identify the major pathways
which mediate glutamine uptake into neurons. We have recently
identified a new member of the neurotransmitter transporter
family, which now allows us to study the function of previously
uncharacterised members of this family. We will clone the
transporters from mouse brain, express them in oocytes and
characterise their function in neuronal or astroglial cell
cultures.
References:
- Broer, A., Deitmer, J. W., and Broer, S. (2004). Astroglial
glutamine transport by system N is upregulated by glutamate.
Glia 48, 298-310.
- Kowalczuk, S., Broer, A., Munzinger, M., Tietze, N.,
Klingel, K., and Broer, S. (2005). Molecular cloning of
the mouse IMINO system: an Na+- and Cl--dependent proline
transporter. Biochem J 386, 417-422
- Seow, H. F., Broer, S., Broer, A., Bailey, C. G., Potter,
S. J., Cavanaugh, J. A., and Rasko, J. E. (2004). Hartnup
disorder is caused by mutations in the gene encoding the
neutral amino acid transporter SLC6A19. Nat Genet 36,
1003-1007.
- Broer, S.,Brookes, N., 2001. Transfer of glutamine between
astrocytes and neurons. J. Neurochem 77, 705-19.
|
| Research
School of Biological Sciences |
Professor Jonathan Stone and Dr Krisztina Valter,
CNS
Stability and Degeneration Group, RSBS |
We are exploring the mechanisms controlling the stability
of nerve cells of the central nervous system, in particluar
the retina of the eye, and especially the neurones specialised
to detect light, the photoreceptors. These highly active and
specialised neurones are amongst the most fragile of CNS cells;
they degenerate in response to both genetic and environmental
stresses. Retinitis pigmentosa (RP) is a diagnosis given to
a group of diseases where the insidious death of retinal photoreceptor
occurs and leads to blindness. RP affects in 1 person in 4,000,
thus about 5,000 Australians and 1-2 million people world-wide.
Patients are usually in their late teens or early 20's when
diagnosed and they face a life of gathering blindness with
no effective treatment. Our laboratory is part of a world-wide
effort to find effective treatment.
Students will aquire the following skills and techniques:
- electrophysiology, ERG recordings and data analysis
- histological techniques, high level microscopy on confocal
and/or deconvolution microscope
- immunohistological techniques
- molecular techniques incl genechip/gene array, real-time
PCR
Projects currently active:
- Effects of environmental factors on the rodent retina
- Protective mechanisms in the rodent retina
- Molecular mechanisms of retinal degeneration
- Roles of mitochondria in retinal degenerations
Further opportunities in new and future projects:
- The role of neuroglobins in the retina - a structural
and molecular approach
- Crystallins in the retina
- Molecular genetics of oxygen vulnerability
Reference: Stone, J., Maslim, J., Valter-Kocsi, K., Mervin,
K., Bowers, F., Chu, Y., Barnett, N., Fisher, S.K., Lewis,
G., Bisti, S., Gargini, C., Cervetto, L., Merin, S. and
Pe'er, J. Mechanisms of photoreceptor death and survival
in mammalian retina. Progress in Retinal and Eye Research
1999; 18:689-735.
|
| Dr Jan Provis, CSD
(Retinal Development and Ageing Lab), RSBS |
Patterning in the Outer Retina of Chicks and
Humans.
In the developing chick retina, there are distinct dorsal
and ventral gene expression patterns which do not overlap
along the horizontal meridian. Rather, there is a middle
ground where neither dorsal nor ventral genes are expressed,
in which territory a rod-free (pure cone) region, resembling
the incipient fovea of the primate, later forms. Using a
targeted gene approach, and in collaboration with Dr Keely
Bumsted-O'Brian at the University of Auckland, we are carrying
out a comparative analyses of chick with human and macaque
foetal retinas to attempt to identify genes which specify
the rod-free, cone-rich region of primate retina. The project
involves Laser Capture Microdissection, PCR, confocal microscopy
and image analysis.
|
| Dr Shaowu Zhang, Visual
Perception and Cognition in Honeybees, Visual Sciences, RSBS
|
The worker honeybee carries a tiny brain. It occupies
a volume of about a cubic millimetre, weighs about one milligram
and contains about a million neurones. Nevertheless, this
creature, by virtue of its lifestyle, is a spectacularly
suitable organism for studying principles of pattern recognition
and learning in a general sense. Over the past decade, work
on the honeybee in our laboratory is beginning to suggest
that insects may not be the simple, reflexive creatures
that they were once believed to be. Bees display perceptual
and "cognitive" capacities that are surprisingly
rich, complex and flexible. Our research focuses on the
following issues:
Study of memory organisation
We are using the delayed match-to-sample (DMTS) paradigm
to study various aspects of memory formation. In the DMTS
task, a bee has to learn to match an "indicator"
stimulus that it encounters at the entrance to a maze with
one of two other test stimuli that it subsequently encounters
in a decision chamber. In such a task, the bee has to remember
the indicator at the entrance and determine which of the
test stimuli corresponds to it. In the DMTS task, two types
of memories are involved. First of all the bee has to learn,
remember and recall the rules of the task. This is an aspect
of long-term memory (or so-called "reference"
memory). On the other hand, whilst executing the actual
task the bee has to temporarily remember the indicator stimulus
in order to carry out the matching task. This involves short-term
memory (or so-called "working" memory). We intend
to investigate the properties of reference memory and working
memory using behavioural and pharmacological approaches.
Categorization of visual stimuli
Recent work in our laboratory has revealed that honeybees
are capable of conceptually grouping visual patterns into
various categories such as stripes, rings and checkerboards.
They can also group natural scenes into various categories
such as flowers, plants and landscapes. The next steps in
this research would be to investigate what cues honeybees
use to make these categorizations, and to determine to what
extent the ability to categorize is innate or acquired through
experience.
|
| Dr Ryszard Maleszka, Molecules
to Behaviour, Visual Sciences, RSBS |
Molecular basis of experience-dependent brain plasticity
in the honeybee, genes and their products, functional neurogenomics.
Our broadly defined goal is to understand how gene function
translates to behaviour. Using a simple, easily manageable
model organism, the Western honeybee ( Apis mellifera ),
we are creating databases of gene expression patterns in
the brain that allow us to unravel the intricacies of genetic
networks controlling the behavioural development of this
species in the context of learning and sociality. To achieve
our goals we are using state-of-the-art molecular technologies
combined with pharmacological and behavioural approaches.
Recent publications
Si, A., Zhang, S. W. and Maleszka, R. (2005) Effects of
caffeine on olfactory and visual learning in the honey bee
( Apis mellifera ). Pharmacol. Biochem. Behav. 82, 664-672.
Kucharski, R. and Maleszka, R. (2005) Microarray and rtPCR
analyses of gene expression in the honey bee brain following
caffeine treatment. J. Mol. Neurosci. 27:269-276
Jones JC, Helliwell P, Beekman M, Maleszka R, Oldroyd BP.
(2005)The effects of rearing temperature on developmental
stability and learning and memory in the honey bee, Apis
mellifera . J Comp Physiol A. 28:1-9.
|
| Dr Michael
Ibbotson, Visual
Physiology Laboratory, Visual Sciences, RSBS |
You can do an Honours project in one of three research
areas in my laboratory. You can study visual processing
in humans, cats or insects. All the projects are working
towards understanding how moving scenes are processed by
the nervous system.
Human visual psychophysics
In these experiments subjects are presented with a series
of visual stimuli that probe the mechanisms used by humans
to extract motion from the visual image during locomotion,
i.e. during walking, driving and sport. Subjects are instructed
to respond based on their perception of what the stimulus
is doing. Computer literate neuroscience and/or psychology
students are qualified for this type of project.
Cat vision
We record from single neurons in the visual cortex of anaesthetised
cats. Although the cat is unconscious, its sensory system
is still fully functional (as illustrated by the fact that
an alarm clock or bright light will wake you from deep sleep).
We record from areas of the brain specialised in detecting
visual motion. The sleeping cat is presented with visual
stimuli and we record the responses of individual cells.
In this way, we can learn about the specific cellular mechanisms
underlying visual processing and perception. These experiments
are demanding but students aiming for a career in neuroscience
are strongly encouraged to apply.
Insect vision
Despite their small brains, flying insects have highly
sophisticated visual motion processing systems. The department
is trying to mimic the intricate processing that occurs
in insect brains to build autonomous flying vehicles. As
the engineering component of this project develops, we need
to learn more about the functioning of the insect brain.
Experiments involve intracellular recording from single
visual neurons in the brains of honeybees and subsequent
reconstruction of the neurons using 3-dimensional visualisation
programs. The stimulus environment is similar to that used
for cats but recording from insects is less demanding. Anybody
with a neuroscience interest is encouraged to apply.
|
| Dr Ted Maddess, Nonlinear
and Adaptive Vision, Visual Sciences, RSBS |
The main research interests of my colleagues and I are
in the area of dynamic, adaptive and nonlinear vision. Techniques
in the lab include eye movement monitoring, psychophysical,
behavioural, and evoked potential (EP) methods. An area
of interest is what visual illusions can tell us about visual
processing. A list of possible Ph.D. or Honours projects
follow although projects proposed by students that fall
within our interests and techniques are encouraged.
Evoked Potentials - New methods allow
EP responses to many concurrently presented stimuli to be
measured. Applied to glaucoma and multiple sclerosis.
Illusory brightness - Illusory brightness,
as seen in the Craik-O'Brien-Cornsweet (COC) effect, can
be investigated in humans and bees.
Apparent Fineness - Certain patterns are
seen to have a scale that is illusory. Our initial work
has shown that cortical processing accounts for some of
the effect.
Spatial Frequency Doubling - We have used
FD in new tests for glaucoma that are being sold internationally.
We would examine how and why we see this illusion.
Texture Discrimination - Iso-trigon textures
is of particular interest here. Both Human and Bee studies
have been conducted.
Second Order Motion - This project looks
at a case where one of these possible mechanisms appears
to break down.
Eye Movements - The study uses eye movements
to investigate adaptive effects under relatively natural
conditions. Application to glaucoma is also possible.
|
| Dr Ian Morgan, A Retinal Dark-light Switch And Eye
Growth, Visual
Sciences, RSBS |
We have described a circuit in the retina consisting
of the photoreceptors, dopaminergic amacrine cells and amacrine
cells which are immunoreactive to enkephalins, somatostatin
and neurotensin (the ENSLI amacrine cells). This circuit
appears to function as a switch, flipping from a dark to
a light state at quite low light intensities. It is important
in relation to control of circadian rhythms and of retinal
sensitivity at different light levels through its regulation
of the rate of release of dopamine, melatonin and retinal
peptides.
This circuit also appears to play a role in relation to
the control of eye growth, primarily through the regulation
of dopamine release. This area of research has become important
because of the emergence of an epidemic of myopia in urban
East Asia, where over 90% of school leavers are currently
myopia, and around 20% with such severe myopia that they
are at significantly increased risk of low vision and blindness.
This epidemic appears to be slowly spreading to other parts
of the world. Our laboratory-based work in Canberra deals
with the molecular and cellular basis of eye growth control
in animal models of myopia. In parallel, we carry out epidemiological
work in Sydney and Singapore in collaboration with the School
of Applied Vision Sciences and the Department of Ophthalmology
at Sydney University, and the Singapore Eye Research Institute.
Recent laboratory work has shown that the interactions
between stimuli that promote and inhibit eye growth and
myopia are highly non-linear. Specifically, short periods
of growth inhibitory signals can neutralise prolonged exposure
to stimuli that promote eye growth. Based on this discovery,
we have obtained promising results in a series of clinical
interventions aimed at preventing the worsening of myopia
with plus lenses. This approach is now the subject of a
randomised clinical trial in Singapore, with a further trial
planned in Guangzhou. The role of dopamine in the suppression
of eye growth with plus lenses is now being studied in the
laboratory.
At the same time, our epidemiological work has shown that
greater amounts of time spent outdoors protect from the
development of myopia. We have reproduced this effect in
animal models. Our hypothesis is that the high light intensities
typical of day-light hours outside promote the release of
dopamine, which is known to act, in certain circumstances,
as a growth inhibitor.
|
| Dr Gert Stange, Sensory
Ecology and Physiology, RSBS |
Reverse-engineering the dragonfly ocellar visual
system: creating a blueprint for the design of control systems
in flying robots
Most adult insects carry two visual systems, namely a pair
of compound eyes and a triplet of simple eyes, the dorsal
ocelli. Knowing that one of the functions of the ocelli
is the maintenance of equilibrium during flight, the biorobotics
group at RSBS has recently implemented a biomimetic version
of the underlying principles and have designed a control
system for robotic miniature aircraft, with superior performance.
This engineering effort has, in turn, inspired a new round
of biological research, with unexpected results. The ocellar
system of dragonflies exhibits features that were previously
unknown, such as image formation by focused optics. The
resulting new project comprises many aspects and methods,
suitable as distinct topics for honours projects.
- Development of an understanding of image processing
in the dragonfly ocellar system.
- Description of the detailed anatomical structure of
the dragonfly ocellar system.
- Description of the anatomy and physiology of the output
neurons that convey the visual information from the ocelli
to the brain and motor control systems of the animal.
- Understanding of the biophysical mechanisms (via intracellular
recording) that allow the ocellar system to extract complex
information such as object detection from the image of
the world produced by the ocellar lenses.
- Characterization of the ocellar optical properties,
by refractometry of the lenses and ray tracing, together
with direct observation of the images formed by excised
ocelli.
- Electrophysiological recordings from single receptor
neurons, in order to determine receptor neuron visual
fields and acceptance angles and to determine the transfer
characteristics in the intensity, spectral and time domains.
- Electrophysiological recordings from second order cells
and establishment of an inventory of structurally and
functionally identified second order neurons, the determination
of their functional properties being the main component
of the project.
- Application of computer-generated visual stimuli that
are partially controlled by the output of the neuron under
investigation, akin to virtual-reality systems.
- Provision of information on central projections and
putative interactions between ocelli, compound eyes and
other sensory modalities.
- Behavioral experiments on tethered dragonflies in a
wind tunnel, in order to determine whether moving visual
stimuli applied to the ocelli evoke steering responses.
The biological results will be applied to the further development
of concepts for novel attitude control systems capable of
being implemented in ultra-light hardware for application
to micro-unmanned aerial vehicles.
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| Dr Jan Hemmi, Visual
Ecology, Visual Sciences, RSBS |
Mammalian Colour Vision
With the exception of some primates, most mammals are dichromats.
This means they have only two spectral cone classes as opposed
to three for trichromats (eg. humans). Recent research,
however, has indicated that at least some marsupials are
also trichromatic. It is as yet unclear what the exact nature
of the third marsupial cone class is. We have recently started
a program to explore colour vision in different marsupials
in more detail, using behavioural, anatomical (immunocytochemistry)
and physiological techniques to characterise their colour
vision. There is a range of potential honours or PhD projects
available in this area using one or more of the techniques
described. I am also open for project proposals in the area
of colour vision or one that is related to the fiddler crab
work (see below).
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Drs Jochen Zeil & Jan Hemmi, Visual
Ecology and Comparative Vision, Visual Sciences, RSBS |
To fully appreciate and understand the properties of
neurons and of sensory systems, there is a need to analyse
the natural conditions in which animals process information.
Neural systems, like all other biological systems, have
evolved in a specific context, defined by the tasks animals
have to solve and the environment in which they live. We
are particularly interested in understanding how visual
systems are shaped by these "real life conditions"
and currently work on the following projects:
Visual ecology of fiddler crabs
We attempt to establish an inventory of visual tasks in
fiddler crabs. The crabs' eyes are exquisitely tuned to
the visual geometry of the flat world these animals inhabit.
We analyse behaviour to identify the visual cues used by
the crabs in predator avoidance and social interactions
and employ a suite of fancy imaging devices to analyse visual
signals and natural scenes from crab perspective. Interesting
challenges are to understand (a) colour vision in fiddler
crabs, (b) the signalling function of their variable body
colours, (c) the choreography of their waving displays and
(d) the image motion signals these displays present to the
brain of a crab observer.
View-based homing in insects
Homing insects are thought to use snapshots of the goal
environment when navigating back to their nest or a feeding
site. Many fundamental aspects of "view-based"
navigation are not understood. We use a panoramic imaging
device on a robotic gantry (which we can wheel around the
ANU) to reconstruct what flying insects see and to study
the limits of view-based navigation outdoors. Projects include
(a) the reconstruction of natural optic flow, (b) the effects
of environmental motion and of variable illumination on
view-based homing and (c) testing different homing algorithms
under natural conditions.
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